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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-20
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILLLLLQN ILVFCQFLQT IKVGLMFSKD TASVIRSVGY RTSAAAVLVA KDRIRAEHLL  60
   61 DQYDFNFTIK FDECSESLAA GKVVELLTHD NVDVIIGPTC NRAGVAVASL ADFYNVPVFQ 120
  121 WGLTTTADIG NFSRYQTTVT LSLDTHSISL AVREILRQYG WSEFVFIYSN DGDEEKCAAM 180
  181 KDDMEKMGIE NSDVTMAYMI QIQTVTMESL QRTLLEVSKR GRIIIACFAS GRGFKKAFIA 240
  241 STVLAGMSTE EYLYVFAEPQ SRGFYVDEAD GKVHYSWDDT DGQLVTGLTN EQIRDAYGKV 300
  301 LYICDNMGEP TTITTQYTNF TSQVISRMAE QPFNCVQDCS NQSYKHAATY AGQLADSFYA 360
  361 YAFALNKSLT QDPTRSNLKN GSFVLSNIGM TFQGVGGEAV TLDESGSRIV QVYMFAMNSS 420
  421 LLPYMAASLL VNVSEVVFTP FYKSESELWS VRPLSRPKCG FTGLECPADF VKEYLVYTII 480
  481 AAFIVILALL AGCAGLLYTM HMKRKEMERQ DLLWQVAFVE LQQVQSKSRA EASMHSFASG 540
  541 PSTSTKMTVE SRTETTNFIF YHYHQEVVAA KKHDLLVLFD ANQKSEFRQM RNFDNDNLNK 600
  601 FIGLCLDGPQ LLSLWRFCSR GSLSDVISKS SMQMDSFFMF SLIRDISNGL YFIHSSFLKC 660
  661 HGQLTSRCCL IDDRWQIKIS GFGLKSVRTF ENPKKEDLLW ASPEYLRNED QERLPEGDIY 720
  721 SFGIICAEIL TRSSAFDLEN RKEKPDVIIY QVKKGGHNPT RPSLDTGETV VINPALLHLV 780
  781 RDCWTERPSE RPSIEQVRSH LNGMKDGRKT NLMDHVFNML ETYASTLEEE VSDRTKELTE 840
  841 EKKKSDVLLY RMLPRMVADK LKLGQTVEPE TFEQVTIFFS DVVQFTTLAG KCTPLQVVTL 900
  901 LNDLYTIFDG IIEQNDVYKV ETIGDGYLCV SGLPHRNGND HIRHIARMSL GFLSSLEFFR 960
  961 VQHLPAERIN LRIGINCGSV VAGVVGLTMP RYCLFGDAVN TASRMESNGK PGQIHVTAEA1020
 1021 NRMLTQVVGG FRTESRGEVI IKGKGVMETF WLLGEESGYT APSKAAPKVI QHRQSIRSIS1080
 1081 PILEKNAEGS ETSSLSVDQA GDNNSETV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle