YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	clc-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAVSYAIL VLTIIAFLLT AAALCTPAWQ VVYAREIRQW VQSGLWLSCQ TRPNGMYSCT  60
   61 YTFSHDDFNT YFSDEVSGFR TPSFYPWQRT LFHIYLISQA FAMLSLISFC VSVSHKESKM 120
  121 PNILRSVFLV LAAVIAFGCL IAFAVYSYMV EYRFFHVSVS GIYEKHRGYS WYIALTGAFV 180
  181 YLVAIILSVV HVLLQARNSN TTMSRQNINS SLQSDFFEYQ YHPNRSMESF EDRFAMRTLP 240
  241 PVPRQEKKTT VF

Type	Start	End	Confidence
Signal Peptide	1	25	0.50
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	90	0.92
Transmembrane Helix	91	113	0.92
Cytoplasmic	114	126	0.82
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	170	0.93
Transmembrane Helix	171	194	0.91
Cytoplasmic	195	252	0.98