YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lin-17
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	206	0.99
Transmembrane Helix	207	228	0.94
Cytoplasmic	229	238	0.93
Transmembrane Helix	239	260	0.91
Non-Cytoplasmic	261	291	0.92
Transmembrane Helix	292	314	0.83
Cytoplasmic	315	329	0.84
Transmembrane Helix	330	350	0.94
Non-Cytoplasmic	351	375	0.88
Transmembrane Helix	376	398	0.93
Cytoplasmic	399	417	0.96
Transmembrane Helix	418	440	0.85
Non-Cytoplasmic	441	473	0.91
Transmembrane Helix	474	496	0.89
Cytoplasmic	497	556	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHSLGIILL FIPLATGSIF DQAVKGKCIP IDIELCKDLP YNYTYFPNTI LHNDQHTLQT  60
   61 HTEHFKPLMK TKCHPHIHFF ICSVFAPMCP IGMPQAVTSC KSVCEQVKAD CFSILEEFGI 120
  121 GWPEPLNCAQ FPDPPELCMK PTEDEITGGF SAPRLPTKGS SSSSSKPTGC PSDLVDVDPH 180
  181 DPKSHCAFAC QSNVMFSTDN KRMVRSWSIW FAAANAGVAL FSFLTFAIDR KRFRFPERCV 240
  241 FYLSLCIFIS SLPYLTPLFI DAPIRSCHAL GNGRSYLSIG TFDNSYCLAS FLLNYFFSTA 300
  301 AALWWLMFSF TLYLSGGRKW VPEGIEACSS YVHFVAWGLS SLATIIVLIF NKVDASELTA 360
  361 LCSVGNLNSI ALLWFVIVPR TICIVIGTCF IVGGFASMCR ERISFRTRGT DTSKLEKLMV 420
  421 KMGFFCALFI LPNVIELVCQ CYKFMILTQW TRMTIDCKQQ SGACHRPTPP QAEIYMTAVI 480
  481 SSLATGFSCL MWVLSAKTVH AWKNFIFCGM CSSAPVKVKP NRAINTSIAR ATNCSATTTT 540
  541 GIHANGDESS EFMETQ