YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28791
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSVSRDDF IWTLTEQPHM SRREEIVKKY PEVKKLFGVD PSLKYVVSSL VIFQIFMCWL  60
   61 LQDADWILII LEAYFCGGII NHAMTLAIHD ISHNTAFGNK YPLKNRFFGM WANLPIAVPI 120
  121 SVSFKKYHVE HHRYLGEDGL DTDVPTTFEA EFFTTAPRKL LWLALQPFFY GFRPLIIYKK 180
  181 APTDMEILNA IIQISFDLLI LHFFGVKSLF YLLFGTIISM GLHPSAGHFI SEHYAFKEDQ 240
  241 ETFSYYGLWN LCTFNVGYHV EHHDFPYIPG RDLPKLRAMA PEYYENLLKH TSMMQILTEF 300
  301 VVNPAMGPYA RLKRKPRVAQ EFYGNYQLFE YVEGFLHHIG VYRLQKFAVN VFDLNNNSKK 360
  361 LN

Type	Start	End	Confidence
Cytoplasmic	1	42	0.84
Transmembrane Helix	43	61	0.70
Non-Cytoplasmic	62	66	0.58
Transmembrane Helix	67	88	0.77
Cytoplasmic	89	106	0.64
Transmembrane Helix	107	125	0.59
Non-Cytoplasmic	126	159	0.49
Transmembrane Helix	160	177	0.38
Cytoplasmic	178	197	0.54
Transmembrane Helix	198	223	0.72
Non-Cytoplasmic	224	362	0.51