YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLGNIKTY AQTVTSLSDN DDTSIDRLNY VVTTSILIAF SLLLFAKNYV GEPMQCWTPN  60
   61 QFAGGWESFA ESYCFIENTY FVPMQDSNLP AAETREGREM IYYQWVPFLL VIQALFFCVP 120
  121 RAFWIIYPSY SGLTIADMIT AARQNGKQLE GADEALEQVA MINWRTEQQK GHGSRIFNCY 180
  181 LVMKLLILLN IVLQFFLLNS FLNTAYTFWG WGIFWDMVNG RHWQESGHFP RVSFCDINVR 240
  241 ELGNIHHWSL QCVLMVNMFN EKIFIFLWFW FAFLLVATAG DFVIWVWRRF DSNSKLGFIL 300
  301 DLLNQEGIDH SPQKASELYK NVLRDDGVLF LRLLDSNSGR LNSEELMKKI YNISVGHATD 360
  361 LNTPIEEHAT SE

Type	Start	End	Confidence
Cytoplasmic	1	27	0.86
Transmembrane Helix	28	50	0.71
Non-Cytoplasmic	51	104	0.76
Transmembrane Helix	105	125	0.84
Cytoplasmic	126	184	0.81
Transmembrane Helix	185	208	0.81
Non-Cytoplasmic	209	263	0.86
Transmembrane Helix	264	287	0.91
Cytoplasmic	288	372	0.90