YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28755
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSATVFNEE QKPCKAVDDR IEIPVETLIK NRKYPNGNSD LSYVLTQLFS GLVLLTMLIL  60
   61 LSFFVFQRLN HKMENLKHEQ MFNDFILKFD RKYTSVEEFE YRYQIFLRNV IEFEAEEERN 120
  121 LGLDLDVNEF TDWTDEELQK MVQENKYTKY DFDTPKFEGS YLETGVIRPA SIDWREQGKL 180
  181 TPIKNQGQCG SCWAFATVAS VEAQNAIKKG KLVSLSEQEM VDCDGRNNGC SGGYRPYAMK 240
  241 FVKENGLESE KEYPYSALKH DQCFLKENDT RVFIDDFRML SNNEEDIANW VGTKGPVTFG 300
  301 MNVVKAMYSY RSGIFNPSVE DCTEKSMGAH ALTIIGYGGE GESAYWIVKN SWGTSWGASG 360
  361 YFRLARGVNS CGLANTVVAP IIN

Type	Start	End	Confidence
Cytoplasmic	1	42	0.58
Transmembrane Helix	43	66	0.87
Non-Cytoplasmic	67	383	0.61