YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28687
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRLSCSCS QAECWTNDES TLRIDAELFE LSQDGQKWDK LDGRLANVRV FNAFDDSSPR  60
   61 LLATSSSGQV LLDTLIPMGE KVHKVSDFFV YLKTEGRTIG FNTLSSRDTS LLISQATNTT 120
  121 AFNMFQHSFS VSVSRIATFE GDSIQPCDEQ PETSNVSLNP LNMVFNYKGS PVEIDLLECF 180
  181 ACSSEAENCV DIAHANNIFR VIVSAHAHLF LIQALNVSSL LLARTTSNLV AINYLARQND 240
  241 KIQQKLIALL ETSESSENAS KEDIRQMLLL KNVVVTQRLN SLQQRALPGI ENVKNIYPLP 300
  301 QHLLKKRSIP IESVHNKIEK NLATTTTTFL LHSMLLLFLY HFFFLLALLL QTNIRTHLPF 360
  361 SLHFLHSIPP LGVFFSVIHL

Type	Start	End	Confidence
Non-Cytoplasmic	1	328	0.66
Transmembrane Helix	329	350	0.89
Cytoplasmic	351	359	0.51
Transmembrane Helix	360	379	0.80
Non-Cytoplasmic	380	380	0.60