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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clh-4
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGAPYQQKK TSFVSGASDS EEEHLGSSEL VADDDESDDN CIVSPRFRKS SSRSALVRTT  60
   61 SFNHKQYRSI KEMIIDLKQE PGKNGLHGLE NGSNHSDRKV TFTLENDLEF PKFRKNRSLW 120
  121 LRMEMNRIKH KLISLSYLLS DWMFLALLGV AVAFISILVD MMVFSFQEIQ RKTVSIYNIY 180
  181 GSDQSYLLWG CGLLGWCGYM IGLVAASACF VHYVAPQAIG SGIPEMKTII RGVILVDYLT 240
  241 LKTLVSKIFG VAMALGSGVP IGKMGPFVHI ASVVANQMCL LAAKFDSAYR EESRRMECLA 300
  301 AACAVGVACT FSSPVGGVLF SIEVTTMYFS VRSYWRGFFA ACCGATTIRL LRAYVVETEV 360
  361 TVSAFYQTSF RPDAFSVDEL PLFALLGLLC GILGAGYISL YRCVVLFLRN NQYAKMVFQR 420
  421 HWIVYPIVIS CIFSVVSYPH GLGMFSTGRI KFGTNLRDFF ANCSFIVTSS DDLVCGAEIY 480
  481 SHWLNRGNIL LLLFLFVLVH FIFSIISFTL PVPSGVFLPV FVLGAAIGRF YGEIIGLALE 540
  541 DIHIIHPGIY AIVGAAAFSA SVTHTVSVSV MIFEITGQLH FILPVMISVM LSNAVCAYLQ 600
  601 PSFFDTIIKI KHLPFLPDIP PSNNLVHTTY AEHIMVTPVK FITKITTYNE IREAVQTGLR 660
  661 LFPVVDSKNS QMLIGTVSRR YLTVLLNGKI GDHPRKVEAE KRVRQAIETI DNHFKDSEKE 720
  721 LKEDRRRICS ETDFVTMQRK KSDIVTPLSQ TIKPLGPGEQ KNRFLVVPLP DVTEPKLYLP 780
  781 PVPSSPTIPV ENTLKRRNSG TRRNALFSLR DMDEKSAKDF LDDHGIEHKT IHGNANEHHT 840
  841 IIKNYMRQAK KYLVHMQFGN NKKGSHDNNP YDLSAEERKV WEEEQLALQL DLTENDIDPA 900
  901 PIQLVKQTSL YKIHSIFSML QLSKAYVTDC GRLIGVVALS DLRKALEHTE EVIKTEKKNS 960
  961 VSHSPSSSNV VKNNLRHVST NVIDILTPPL EVARGTTLET NTVVPDVISS PKEVFPPPPF1020
 1021 EPRSSLRQRQ PRSINFGIEP RKRSGSEFGQ RPEEFVEAVA YLRRKSHAIV IPRLHEEPGE1080
 1081 SSSSE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle