YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28593
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.88
Transmembrane Helix	85	112	0.82
Non-Cytoplasmic	113	122	0.64
Transmembrane Helix	123	142	0.53
Cytoplasmic	143	167	0.58
Transmembrane Helix	168	192	0.84
Non-Cytoplasmic	193	202	0.58
Transmembrane Helix	203	229	0.84
Cytoplasmic	230	240	0.63
Transmembrane Helix	241	266	0.74
Non-Cytoplasmic	267	272	0.50
Transmembrane Helix	273	294	0.90
Cytoplasmic	295	303	0.55
Transmembrane Helix	304	325	0.86
Non-Cytoplasmic	326	334	0.41
Transmembrane Helix	335	352	0.44
Cytoplasmic	353	397	0.85
Transmembrane Helix	398	419	0.92
Non-Cytoplasmic	420	435	0.89
Transmembrane Helix	436	459	0.90
Cytoplasmic	460	468	0.90
Transmembrane Helix	469	490	0.91
Non-Cytoplasmic	491	503	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGGGIGDG KKDYQSAVHE GLTTFDQLGI ALEDVGKSMD AETATPGGSL FSRVMNENSS  60
   61 LKSRTYDHSN DLVNMSVIPA ESSYVLFFQV LFPFAVAGLG MVFAGLVLSI VVTWPLFEEI 120
  121 PEILILVPAL LGLKGNLEMT LASRLSTLAN LGHMDSSKQR KDVVIANLAL VQVQATVVAF 180
  181 LASAFAAALA FIPSGDFDWA HGALMCASSL ATACSASLVL SLLMVVVIVT SRKYNINPDN 240
  241 VATPIAASLG DLTTLTVLAF FGSVFLKAHN TESWLNVIVI VLFLLLLPFW IKIANENEGT 300
  301 QETLYNGWTP VIMSMLISSA GGFILETAVR RYHSLSTYGP VLNGVGGNLA AVQASRLSTY 360
  361 FHKAGTVGVL PNEWTVSRFT SVQRAFFSKE WDSRSARVLL LLVVPGHICF NFLIQLFTLT 420
  421 SKNNVTPHGP LFTSLYMIAA IIQVVILLFV CQLLVALLWK WKIDPDNSVI PYLTALGDLL 480
  481 GTGLLFIVFL TTDHFDPKEL TSS