YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-1
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKERTEPQ WVTPSSNQDV PPDYETIGTI FGYALQALSW ILIIVTFPFS MCVCLKVIKE  60
   61 YERVVIFRIG RLVFGGARGP GMIFIIPCID TYRKIDLRVV SYAVPPQEIL SKDSVTVSVD 120
  121 AVVYFRTSDP IASVNNVDDA IYSTKLLAQT TLRNALGMKT LTEMLTEREA IAQLCETILD 180
  181 EGTEHWGVKV ERVEVKDIRL PQQLTRAMAA EAEAAREARA KVVAAEGEQK ASRALKEAAD 240
  241 VIQANPVALQ LRHLQALNSI AAEHNSTIVF PVPVEMFGAF MKKDQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.88
Transmembrane Helix	37	58	0.84
Cytoplasmic	59	68	0.78
Transmembrane Helix	69	89	0.55
Non-Cytoplasmic	90	285	0.67