YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28526
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.92
Transmembrane Helix	44	69	0.77
Non-Cytoplasmic	70	126	0.79
Transmembrane Helix	127	160	0.77
Cytoplasmic	161	207	0.97
Transmembrane Helix	208	228	0.88
Non-Cytoplasmic	229	258	0.87
Transmembrane Helix	259	281	0.87
Cytoplasmic	282	318	0.96
Transmembrane Helix	319	339	0.79
Non-Cytoplasmic	340	353	0.77
Transmembrane Helix	354	373	0.91
Cytoplasmic	374	405	0.89
Transmembrane Helix	406	429	0.67
Non-Cytoplasmic	430	445	0.50
Transmembrane Helix	446	466	0.81
Cytoplasmic	467	467	0.34
Transmembrane Helix	468	491	0.44
Non-Cytoplasmic	492	492	0.35
Transmembrane Helix	493	516	0.69
Cytoplasmic	517	525	0.61
Transmembrane Helix	526	551	0.80
Non-Cytoplasmic	552	577	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIINNTFD IDQKGFYFEK KVNLKFQLSN DKLWHRSLEG KCAFVILTMS CYWVAEVVPL  60
   61 AVTSFIPMIA LPFLGIVSIK EVAPKYFADT NIVFFNSLML SLAVEECQLH KRIALKMLTY 120
  121 VGTRPHWLMA GFMIITSFIS LWISDTACCA LMAPIAYALL EEIMIPKMRP EEKENEIEVM 180
  181 KIFDKEDPEE KEKKKLDTSR LSVRDRGICK CMMLLVAHAS LIGGTGTINS TGPNLIFRDN 240
  241 IEKNFPNEDH GISYLSWMAF AIPPMIFYMF SSWFIVQLQF LGPRHLMGMF REPTETEKQE 300
  301 EEVAKRAVWK SYDQLGPMTW AEKSTLVIFV LAVLSWVSSD PKVIPGWSDL FRKGYVTDSC 360
  361 SGLVAVFLLF IWPKKKPDFR IFRKDKSRPS VRQEPLIDWD CVRRRFPWSI ILLLGAGFAI 420
  421 SDAVRVSGLS SLIACSLNST ISKMPFFVMQ IILSIVVVVM TEFSTNSATA SIFIPISFKM 480
  481 AEAVGAHPLY FSIPTAIGPS FSFMLPMATP ANAIVYETKT IRMIDMVSCG VFLNIFCIAI 540
  541 TAINMNTWAF WLFNMGTYPD YALRHATNMT GNSSQCF