YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.94
Transmembrane Helix	34	55	0.91
Non-Cytoplasmic	56	63	0.74
Transmembrane Helix	64	86	0.89
Cytoplasmic	87	119	0.82
Transmembrane Helix	120	139	0.90
Non-Cytoplasmic	140	154	0.76
Transmembrane Helix	155	172	0.96
Cytoplasmic	173	181	0.78
Transmembrane Helix	182	202	0.93
Non-Cytoplasmic	203	224	0.88
Transmembrane Helix	225	246	0.80
Cytoplasmic	247	256	0.91
Transmembrane Helix	257	280	0.85
Non-Cytoplasmic	281	303	0.92
Transmembrane Helix	304	328	0.84
Cytoplasmic	329	354	0.84
Transmembrane Helix	355	374	0.93
Non-Cytoplasmic	375	383	0.72
Transmembrane Helix	384	402	0.95
Cytoplasmic	403	414	0.84
Transmembrane Helix	415	436	0.92
Non-Cytoplasmic	437	442	0.84
Transmembrane Helix	443	462	0.95
Cytoplasmic	463	493	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKQEQSEPL NQEPSNEHHD EEVGDKGLEK TMTLFNGVSI IVGCIIGSGI FISPTGIQAQ  60
   61 AGSVGLSLIV WVLSGLFAGI GAFCYAELGT LIRKSGGDYA YIMEAFGPFL AFLRLWIESI 120
  121 VVRPCTATIV ALTFAIYMLK PFYPDCDSPP LSTELIAALL LVLLTAVNCI SVKWASKVQD 180
  181 FFFVTKTAAL VLIIFTGLWN MVSGKPEAFD SFENIFENTA KDLETASLAF YSGLFAYQGW 240
  241 NYLNFIVEEL QNPKRNLPLS IAISCSLCTI IYTLTNVALY TSITPDEMLA SPAVAVLFAE 300
  301 KNYGWFAFCM PIFVACSTIG SANGVILTSS RLFYCGAREG QMPNVLTMVN KTTKTPIPAV 360
  361 ILTGLLSLLY LLLSNNIYSL INYIQVSYWI AIGGAILALF YFRKTMPDAP RAVKAPIVFP 420
  421 IIFFIGCVLL VLVPVLGNPK DTAIGILIML SGVPVYLIFI AWKGKPKCID SLTDSVTIFT 480
  481 QKLFMVVDAN KEE