YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cng-1
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKGMLDTVK LRIFLFLTSF ELLETGSTFL TQQWRNCDQN LFNEYLKTYK NGGYSQFEAL  60
   61 RGWMQRAQKR LHLFRKNDVD IETNFREALR EEQEDDEKSS GFMSFTVDEH SNTFYLWTGL 120
  121 VSLVALHPLV FTALSVFQDV HPFLRNTGPL NLLLDLVNIL DLIAHTRIEY VENGVAVKNL 180
  181 SKLMHHRLKS TFFILDVIAV VPAESLHIFG DSFFWSRINR LTKCYRLFDF STQTDTRTTS 240
  241 PHAFGLFKLI FICVVIFHWN GCLYFYISKV YNYTTARLEH WIFSYDKIIN PILATCVTDI 300
  301 PNHRDFCDTD DLLITHLPEN EVQFTVTDYM TTWENKTTTI KFANFFRQYA LSFYWSALTL 360
  361 VTLGEQPSPC TTFQNAFEIG DTLLGLVIFA VIVGDVGNMV VAINLRKSEF ENVLDGCKRF 420
  421 MVYRKVPNLL RKKAVEYFAY VWAHGGAQVD EEEIAEFLPP RLFGEIAVEI HMDTLKKVKL 480
  481 FESCDPRLLY ELILKLQLRV YSPMDYICKK GDVGTEMYIV KEGFVEVVSE DGQTIFVTLP 540
  541 AGFVFGELSI LNIPGNKNKN LRTASVRSKG YSDLYVLDKE DLWEALHEYP QAKDSLIQKG 600
  601 IQILEKDKMI DPNMVDDEDE SFNGPIEDYM EHLEHEILKI TKMIDQAEDK IHKSNQKMKT 660
  661 RLFGMEMDLV HEIKELLKEN SWKRIARFAD GVTVL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.72
Transmembrane Helix	13	31	0.44
Non-Cytoplasmic	32	112	0.65
Transmembrane Helix	113	137	0.76
Cytoplasmic	138	189	0.78
Transmembrane Helix	190	209	0.84
Non-Cytoplasmic	210	245	0.86
Transmembrane Helix	246	267	0.86
Cytoplasmic	268	344	0.88
Transmembrane Helix	345	364	0.54
Non-Cytoplasmic	365	381	0.59
Transmembrane Helix	382	402	0.72
Cytoplasmic	403	695	0.54