YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gly-12
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVLRRSAS KHASTLFKII CILVLCSFII YLKSEDHDLQ KNTAIHAPRS NSREDEDDIL  60
   61 IPADNKDQQF VAAVLVFCAT RPDALRNHLS QILAQRPSHF QYHIIVSQDG NKTAVTQVAQ 120
  121 KFVKDYKNVS HIQHEKTEIK KRNNYPAISA HYKWALDKAF KGFRYDHVIV TEDDLDIGND 180
  181 FFSYFRWGKQ VLNSDDTIWC VSAWNDNGGG PLIDSTRGDL IWRTDFFPGL GWMLTKKLWN 240
  241 ELSPGFPVAY WDDWMRKPEV RKSRSCIRPE ISRTSHNMKL AGKGSSGGMF KDYLSKISAS 300
  301 SANIDFSLLP VTLVQKSIYD KRLIEQIENA RPIDLQNTTG MEKTYNYKIV YKNIRDWHRL 360
  361 AAHFKLMTDI RGGMQRTAYY GVVTLMFQNC RVFLVPESTY RNPSQLTSYV YDSEWDKQNR 420
  421 FIEFEAYYCK TKKYAGKCDP HSPEMIAFFK KKGWKKRLDD WGEMLVV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.64
Transmembrane Helix	14	32	0.66
Non-Cytoplasmic	33	467	0.99