YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mca-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.97
Transmembrane Helix	86	104	0.94
Non-Cytoplasmic	105	120	0.94
Transmembrane Helix	121	142	0.91
Cytoplasmic	143	333	0.95
Transmembrane Helix	334	355	0.91
Non-Cytoplasmic	356	375	0.85
Transmembrane Helix	376	398	0.91
Cytoplasmic	399	822	0.97
Transmembrane Helix	823	845	0.82
Non-Cytoplasmic	846	854	0.68
Transmembrane Helix	855	874	0.82
Cytoplasmic	875	898	0.87
Transmembrane Helix	899	918	0.89
Non-Cytoplasmic	919	938	0.80
Transmembrane Helix	939	956	0.86
Cytoplasmic	957	975	0.74
Transmembrane Helix	976	996	0.90
Non-Cytoplasmic	997	1008	0.72
Transmembrane Helix	1009	1029	0.84
Cytoplasmic	1030	1234	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEYGASLEE LRALMEYRSA EAKEKIETDY GGTTGLCERL KTDPNNGLPN NEEELERRRN  60
   61 VFGANEIPPH PPKCFLQLVW EALQDVTLVI LLVSAIVSLA LSFYRPPGED TAGSDDSEHD 120
  121 AGWIEGVAIL ISVIVVVLVT ALNDYTKERQ FRGLQAKIET EHRFFVLRGG QSVQVVVNEL 180
  181 VVGDIAQIKY GDLIPSDGII IQSNDLKMDE SSLTGESDQI RKSPEHDPII LSGTHVMEGS 240
  241 GKMLVTAVGV NSQTGIIMTL LGAAKTVAEE ERKTAKREGG DGASGAEEGT AQALLDSKGD 300
  301 EAMANGKAVA AAESDGKKER SVLQAKLTRL AIQIGYAGSF VAGCTVLILI IRFCISRYAI 360
  361 DGKSFSLADF QHFINFLIIG VTVLVVAVPE GLPLAVTLSL AYSVKKMMLD NNLVRHLDAC 420
  421 ETMGNATAIC SDKTGTLTTN RMTVVQSFVN DVHYKDTPKI ESLDQNTAKL MMDCISINSS 480
  481 YSSQVIPPKQ LGEQATQLGN KTECGMLGFV LALGKSYQEI RDRHPEETIP KVYTFNSVRK 540
  541 SMSTVINLPD GGYRVFSKGA SEIVTKRCKY FLGKNGTLTK FSSKDAENLV RDVIEPMASD 600
  601 GLRTICVAYK DYVPSSKKTA DNQIAYSSEP DWENEEMIVG DMTAIAVLGI QDPVRPEVPA 660
  661 AITRCQEAGI TVRMVTGDNI NTARSIATAC GILKPGEDFI ALEGKEFNAR IRDENGEVSQ 720
  721 EKLDLIWPKL RVLARAQPSD KYVLVKGIID SRVTDSREVV AVTGDGTNDG PALKKADVGF 780
  781 AMGIAGTDVA KEASDIILTD DNFTSIVKAV MWGRNVYDSI AKFLQFQLTV NVVAVVVAFV 840
  841 GACAIQDTPL KAVQMLWVNL IMDTLASLAL ATEMPTEELL KRKPYGRTSP LISRTMCKNI 900
  901 LGHAVYQLVI LFTLIFYGEV CFNIPSGRWA PLHSPPSKHF TIVFNTFVMM TLFNEINARK 960
  961 IHGERNIFKG LFSNPIYYVI WIATMISQVV IIQFGGRWFS TSALNTTEWL WCLAFGVGTL1020
 1021 LWGQIVTSIP TGSLPANMTI GSGEAPTNDP LMPDYEDSDT HEKRSGQILW VRGLTRLQTQ1080
 1081 LRVVKAFRSS LEEFDERRSI ASTHSVQSMR GGFWSGGGRH TTTAASPEPA GQRIAMAAIT1140
 1141 HRQSPQPYPY YHHQQPRTPS PQPHIVVENG TSSGNNGQAA TAAAAAPKAE TNGKTEKVPL1200
 1201 VQQWSPDTNS SYTQTQRSIN KSMSLDTPVS VAHV