YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-2
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQFTKLFS FILANVHDPA APEDAALRLP CYSCMSPYLE DHYPYISHLY RKPLSFDTHC  60
   61 DKHSLETSYL YSKNCSDMCV TLRINDVVGG RRRHGYMRGC LSDLHGYNHS LIRTLAERQG 120
  121 CLDTTARELF LPTAQRQELE PSRLSLCACH NNLCNFSVSP PCFFIFLFVI LVIFLMR

Type	Start	End	Confidence
Cytoplasmic	1	152	0.64
Transmembrane Helix	153	175	0.88
Non-Cytoplasmic	176	177	0.58