YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-2
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADVLQIVS YLLANVSDFN SALRLPCYSC MSPYLEDHYP YISHLYRKPL SFDTHCDKHS  60
   61 LETSYLYSKN CSDMCVTLRI NDVVGGRRRH GYMRGCLSDL HGYNHSLIRT LAERQGCLDT 120
  121 TARELFLPTA QRQELEPSRL SLCACHNNLC NFSVSPPCFF IFLFVILVIF LMR

Type	Start	End	Confidence
Cytoplasmic	1	148	0.74
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	173	0.66