YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sup-9
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQNIRTLS LIVCTLTYLL VGAAVFDALE TENEILQRKL VQRVREKLKT KYNMSNADYE  60
   61 ILEATIVKSV PHKAGYQWKF SGAFYFATTV ITTIGYGHST PMTDAGKVFC MLYALAGIPL 120
  121 GLIMFQSIGE RMNTFAAKLL RFIRRAAGKQ PIVTSSDLII FCTGWGGLLI FGGAFMFSSY 180
  181 ENWTYFDAVY YCFVTLTTIG FGDYVALQKR GSLQTQPEYV FFSLVFILFG LTVISAAMNL 240
  241 LVLRFLTMNT EDERRDEQEA ILAAQGLVRV GDPTADDDFG RLPLSDNVSL ASCSCYQLPD 300
  301 EKLRHRHRKH TEPHGGPPTF SGMTTRPKY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.63
Transmembrane Helix	8	26	0.50
Non-Cytoplasmic	27	108	0.48
Transmembrane Helix	109	129	0.90
Cytoplasmic	130	152	0.72
Transmembrane Helix	153	177	0.84
Non-Cytoplasmic	178	186	0.69
Transmembrane Helix	187	207	0.85
Cytoplasmic	208	218	0.70
Transmembrane Helix	219	242	0.89
Non-Cytoplasmic	243	329	0.72