YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	prx-13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPTNQPP PLPPRSFDNQ MSNPMINTGF GYGGGYGMNT FPGSGMYGGG GMYGGGMGYG  60
   61 GFGGGFNHMG YGQGPDSNFA RLAEEQSRGA FQSIESVVNA VSSVANMLNS THNAVYSSFR 120
  121 AVIGVVEQFG RLKTQLSSVV VSLAVFRWVY RFWRWLLVML KLKPASYASA AEMAWGTSQP 180
  181 YATDVLGATR TPASVNWPAA LFWVVAIGGP WLIYRCVSQM VQAAEEKRKW ATGAAPHYTA 240
  241 QALFDFQASN EQELSFMNGE TLRVAPKEEQ PRVRGWLLAS VADGSRIGLV PINYVRIVGK 300
  301 QSQSPPLTQQ SNLDTFVNAF PARDLNSNIQ

Type	Start	End	Confidence
Cytoplasmic	1	28	0.63
Transmembrane Helix	29	43	0.37
Non-Cytoplasmic	44	44	0.34
Transmembrane Helix	45	71	0.62
Cytoplasmic	72	131	0.54
Transmembrane Helix	132	150	0.63
Non-Cytoplasmic	151	196	0.55
Transmembrane Helix	197	218	0.81
Cytoplasmic	219	330	0.81