YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ooc-5
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDYVLLLL FHLCFVNTEL ISVITGTTIA ISAGAFWGLK DRLKCYLYEC CHEPDVNFNY  60
   61 HTLDADIANL LFGQHLVKDV VVNSIKSHWY NENPRKPLVL SFHGYTGSGK NYVAEIIANN 120
  121 TFRLGLRSTF VQHIVATNDF PDKNKLEEYQ VELRNRILTT VQKCQRSIFI FDEADKLPEQ 180
  181 LLGAIKPFLD YYSTISGVDF RRSIFILLSN KGGGEIARIT KEQYESGYPR EQLRLEAFER 240
  241 ELMNFSYNEK GGLQMSELIS NHLIDHFVPF LPLQREHVRS CVGAYLRKRG RGDLVSNVDF 300
  301 VERVLNSLQY FPESSKAFSS SGCKRVDAKT DLEMAKIRPL LSSVHFDDEL

Type	Start	End	Confidence
Signal Peptide	1	18	0.66
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	350	0.90