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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: csp-2
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGWLLITI CSGIITKCIN AHSSPYQNAN ESAIDDAYFL VLIIPAVSVA IVLVVVIFLC  60
   61 CPRQQIRSDN VIKLEEGVND VIEENVTHVV SLREAKVSGM MTDLTRFRQE IFTKHLTFNS 120
  121 NPESIDAATK NVQNVKQSLD TWRDRIKERL DEIDRLCTEE GDSLTPEQYS ALREMRRQLA 180
  181 DEYDTVLRTV EGIHTRLNIL SALLIEFSSV TSSMQSWMTD RARLAGDIRH KSGDPMRVDE 240
  241 ARFEAKSLMD EVVREESRLK TIGASVLKIE QEISAMRDDV RASRSTDDVG ISMDEVYEKR 300
  301 RRVEVDYMQL LRQCQDLISL QIRLHAMNDE HAEQARRAEG WLQMLKNDVA GVAKDPRFKK 360
  361 DEDLIERDEE LNRMAAGGSG GPTSRQLAMR EKIEQREREE EEWRRKAKEK FEEEAAKNRA 420
  421 RERKWAEEHG FNRPIRTRSQ KYAEQDRIRY ARKKAALEQS NEQSNESTDD AVESDSDDVP 480
  481 APQSPPTPSP ADPGPTTSSS SLTQDPASNA TGFSDVPAPQ APPTPSPADP GPTTSSSSLT 540
  541 QDPASNATGF SGSSPPNSFE ETRMMCEDAS DGKKIDETRK YRNNRSSKCR AIIINNVVFC 600
  601 GMEKRIGSDK DKKKLSKLFE RLGYQSTSYD NLKSSEILET VRQFTQSNHG DSLIITIMSH 660
  661 GDQGLLYGVD GVPVQMLDII DLMCTASLAK KPKWLMCVCC RGDRIDRAVR CDGFIDNFFD 720
  721 RFPKFFQFMK SKFPSHQTSS SQADLLVSFS TSPGFLSFRD ETKGTWYIQE LYRVIIENAK 780
  781 DTHLADLLME TNRRVVEKYE ADKVVIVCKQ APEFWSRFTK QLFFDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle