YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLLYYFAS AVKSIQFHVD DDIIDKLNYY YTTAIITVFA ILVSAKQYVG FPIQCWVPAT  60
   61 FTEPMEQYTE NYCWVQNTYF LPLHDYIPHN YAERENRQIG YYQWVPFVLA LEALLFYVPT 120
  121 IVWRLLSWQS GIHVQSLVQM ACDSRLLDLE SRNRALQTIA TNVEEALHVK HQVMSGNRLK 180
  181 LLNLIICTRS SGAAVTFLYI SVKILYTVNI VGQIFLLNTF LGNRSKWYGL QVLNDLMNGR 240
  241 EWEESGHFPR VTLCDFEVKV LGNVHRHTVQ CVLMINMFNE KIFLFLWFWY FLLAGATLCS 300
  301 LFYWIYISVV PSRQLNFVGK YLTGIEGYKM VDSQSLRRFV FHFLRQDGVF LLRMVATHAG 360
  361 ELPCYELAKT LWNNYCDNKE GKMHDV

Type	Start	End	Confidence
Cytoplasmic	1	28	0.84
Transmembrane Helix	29	49	0.50
Non-Cytoplasmic	50	103	0.52
Transmembrane Helix	104	126	0.79
Cytoplasmic	127	184	0.57
Transmembrane Helix	185	200	0.46
Non-Cytoplasmic	201	201	0.28
Transmembrane Helix	202	221	0.58
Cytoplasmic	222	282	0.70
Transmembrane Helix	283	307	0.90
Non-Cytoplasmic	308	386	0.71