YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28230
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAQIGYYR RSSRLKFDSS HSTLRLVEMA SQFLRSTNSR YVAGVLAALG AGSAVYTLTP  60
   61 QQLQAKSEVD AATIKKIEEA YAKLNGPEGA KCKSLLKKHL TKEVVEKLKT KRTKVGATLY 120
  121 DCIRSGVYNL DAGVGVYAPD AEAYTLFAPL FDKIIEDYHG FSPKQKQPPV DLGEGKTKEF 180
  181 PPLDPKGKYI KSTRIRCGRS LKGYPFNPCL TQDNYLEMEG KVKKAFSEYS DKELKGKYYP 240
  241 LDGMGKDTQK QLIADHFLFK EGDRHLQYAN ACNFWPKGRG IFHNNDKTFL IWVNEEDHMR 300
  301 IISMQEGSDV GAVLDRLIKG VRGIEKQVPF SRDDRLGWLT FCPTNLGSTV RASVHIALPK 360
  361 LAARKDFIEI CEKLNLQVRG IHGEHSDSVG GVYDISNKAR LGLSEYQAVK QMYDGVKKLI 420
  421 EMEEKQK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.68
Transmembrane Helix	39	58	0.66
Non-Cytoplasmic	59	427	0.99