YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTATVLQYI LAFAMFVVTA AIGIVPLFIV RVMKRSQNES EQGYLSYLTC FAGGVFLATC  60
   61 FLDIIPHINE GYEELMETYD LNWHFAYPQF VTCCGFFFIY FIEEFTTFVF GNGQQPGHGH 120
  121 SHSLNKGNKI TTTSDGRLSP GMPKERKGSV NITNLRMEEA STWVVSDEKS NILKSLTFAV 180
  181 AMSFHSLLEG FALGVQDSKG RIYALFFSLL LHKGVEAFSV GLQISMANSN KVKTVLATIL 240
  241 IYSLMAPLGS IMGSILQNSE TNIYKDCAIL LLESLAAGTF IYVTFIEIMA SEKSNDFNHL 300
  301 KQLLWIIIGF ALVTTMQVFF GHEHGGEHAH GGAEGNGTEH GHQHHHHGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.87
Transmembrane Helix	9	30	0.95
Cytoplasmic	31	43	0.88
Transmembrane Helix	44	65	0.95
Non-Cytoplasmic	66	84	0.87
Transmembrane Helix	85	102	0.95
Cytoplasmic	103	175	0.94
Transmembrane Helix	176	193	0.60
Non-Cytoplasmic	194	201	0.51
Transmembrane Helix	202	222	0.60
Cytoplasmic	223	233	0.77
Transmembrane Helix	234	256	0.90
Non-Cytoplasmic	257	266	0.78
Transmembrane Helix	267	286	0.92
Cytoplasmic	287	302	0.75
Transmembrane Helix	303	321	0.95
Non-Cytoplasmic	322	349	0.88