YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28189
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFHFINCF ALAFAPYFIV YKYSGINEYS SIWKCATASG GYLLTQLAKL LIIATFFPAL  60
   61 DSEGFSIVPE FLKSSADIID VIGLHLLMTN FLAGKGEVRF VVGGLGWGFA HSVAHRLVLL 120
  121 WVGARGTAFT WRWVQTSLDS SADLLVIVSL ACLTWMITRT PNKFLVSPIL AMCVFSTFVY 180
  181 QTVQHTFSLY GWSLLAFRFA YSIATAILTV VVYSANRTAS TRKNE

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.67
Transmembrane Helix	4	25	0.71
Cytoplasmic	26	37	0.71
Transmembrane Helix	38	60	0.67
Non-Cytoplasmic	61	73	0.63
Transmembrane Helix	74	93	0.59
Cytoplasmic	94	99	0.69
Transmembrane Helix	100	119	0.80
Non-Cytoplasmic	120	139	0.65
Transmembrane Helix	140	157	0.90
Cytoplasmic	158	163	0.85
Transmembrane Helix	164	183	0.92
Non-Cytoplasmic	184	193	0.77
Transmembrane Helix	194	215	0.90
Cytoplasmic	216	225	0.90