YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glc-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRSLLNIL LIVAFWIVGG NCDASSDTEI IKKLLGKGYD WRVRPPGINL TIPGTHGAVI  60
   61 VYVNMLIRSI SKIDDVNMEY SVQLTFREEW VDGRLAYGFP GDSTPDFLIL TAGQQIWMPD 120
  121 SFFQNEKQAH KHDIDKPNVL IRIHRDGRIL YSVRISMVLS CPMHLQYYPM DVQTCLIDLA 180
  181 SYAYTENDIE YRWKKTDPVQ LKKGLHSSLP SFELNNVDTT LCTSKTNTGT YSCLRTVLEL 240
  241 RRQFSYYLLQ LYIPSTMLVI VSWVSFWLDR GAVPARVTLG VTTLLTMTTQ ASGINAKLPP 300
  301 VSYTKAIDVW IGACLTFIFG ALLEFAWVTY ISSRSFYKRN KNCSSRNSLL IETKQALIIP 360
  361 NTVVAQFPEH PEEVEMGLAQ APDVWIRQSG NGKTVSRVNG HINHNNDEAA ELIIFDAKHK 420
  421 NRRFVWWTNF RNIRLIRWIR NRLNVDDNAK RADLISRVLF PTLFVCFNFV YWTKYSQYHA 480
  481 PEAK

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	245	0.99
Transmembrane Helix	246	267	0.92
Cytoplasmic	268	274	0.83
Transmembrane Helix	275	294	0.86
Non-Cytoplasmic	295	308	0.77
Transmembrane Helix	309	331	0.93
Cytoplasmic	332	484	0.86