YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE28154
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTRTFYSMM VGTLLQLFGR EFLQLTQLSK DDITDSFDVQ KLVTQPHRVN MDLLTFIAWG  60
   61 IIVGIIYILS LLALKFTTIR VIIVTLAFIP IALMIAFFIF RIPQLTNEPH KSQFFSAWKI 120
  121 GGHRGSAHDD IPENSLEAFS AVKREGGQLA EMDIQITLDG VPVICHDANT VRVTGVDKDI 180
  181 STMNITEFRK LRFTGTNISL PTFEEAVSYC VANDIMMIWD VKNVDENLLK QFVIQMKTHN 240
  241 LYSKVLVSGF NPIDTYKVKM ADPKILTGFT WRNWELSTTD EAARIPRFTG ALNAIASVLD 300
  301 VLVFGLARSL IMPKFLGSDV IFYHVNDISS FLKTDAAANN IYLAGWTSNN PTEQVWLRDY 360
  361 LNVPFLTDNV GTVPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.47
Transmembrane Helix	53	74	0.90
Cytoplasmic	75	80	0.49
Transmembrane Helix	81	102	0.92
Non-Cytoplasmic	103	375	0.63