YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-4
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILFDVQLQE WVTKSAKNHE FVLSDKGIPA SAYFLLGSFC SDGDIHVAYA SKCPVHSSAL  60
   61 EENATESSKM LEDEWMSDHA ERLLRMLPGG IHVVGIAWFS DKKTFSDRKS HIHKTLGRIQ 120
  121 KMNNQITTAN VDDSISDNMI TVFFETPSTT PIGAIIDVTN RGNDSAQKVQ FQKLEWISLV 180
  181 TNASARIVHN VPVDTGRPTD FYSDLVVATK NFVNNLFQCE FTLLDGEIRD DKEPLIKDIK 240
  241 KNKKTTIEAQ LFLNPLFLDN RELGAIDDIA SNMHEVLFDI EVRAAVPIRS TVKDAIRAIK 300
  301 HHLVRNLFAR VELHYESMEV VEEERSPKTG ITVHQLPRPA TTVLYTHPAI LINDFLFEAD 360
  361 NVEDAQKNFD DMMDLQTSIE HVDEGWERAL TPEEMEAVRT PIEDLHFVDF DGSSDSWCTT 420
  421 KTILITIALI IGLLASIIYF TVAHS

Type	Start	End	Confidence
Non-Cytoplasmic	1	421	0.74
Transmembrane Helix	422	443	0.92
Cytoplasmic	444	445	0.68