YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-49
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPFTLIVL LSAHLCLHVV VTQDEDSHIN TQLLSSVLDR LTNRTTYDKR LRPRYGEKPV  60
   61 DVGITIHVSS ISAVSEVDMD FTLDFYMRQT WQDPRLAFGS LDLGLSKEID SLTVGVDYLD 120
  121 RLWKPDTFFP NEKKSFFHLA TTHNSFLRIE GDGTVYTSQR LTVTATCPMD LKLFPMDSQH 180
  181 CKLEIESYGY ETKDIDYYWG KKRTDLEITA VKFDTFQLPQ FQPTLYFVNT TKAETSSGKY 240
  241 VRLALEVILV RNMGFYTMNI VIPSILIVTI SWVSFWLNRE ASPARVGLGV TTVLTMTTLI 300
  301 TTTNNSMPKV SYVKGLDVFL NFCFVMVFAS LLEYAIVSYM NKRLVLRREK RRKAAEQQQR 360
  361 NEMPMFNASP KAANNNSYEM TLMSQNSTPA KSYVQADLYF AGHNSSMNPL MEIPENCDCR 420
  421 TIPMMQHPRL VTDGAHTLWP APFARPKKAS KTCCQRWTPA KIDKLSRYGF PLSFSIFNIV 480
  481 YWLYMKYLSL NSSDKIQEND KWQQIH

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	252	0.99
Transmembrane Helix	253	276	0.90
Cytoplasmic	277	283	0.86
Transmembrane Helix	284	303	0.91
Non-Cytoplasmic	304	317	0.87
Transmembrane Helix	318	340	0.90
Cytoplasmic	341	464	0.99
Transmembrane Helix	465	485	0.76
Non-Cytoplasmic	486	506	0.80