YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-7
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVQSIQIVL PVALFFLIVF NGFTVEGSKK EAQLYRDLLT NYSYLVRPVR NPKKALTVTM  60
   61 KVFIQQVLLV DAKHQMIEVN AWLKYIWTDF RLRWNPLDYE NITSVRFQGE DQIWQPDILL 120
  121 YNRYIEDEQE SFDITYKTNA VAYSDGVINW IPPGIFKLSC KMDITLFPFD EQICFMKFGS 180
  181 WTYHGFALDL RLDVVKGQEP SADLSTYITN GEWHLLSAPA RREEKFYKCC KEPYPTVKFY 240
  241 LHLRRRTFYY VFNVVLPTLL VSFMSLLAFC LPATDLSEKI GLQTTILLSV CFFLTILSEM 300
  301 TPTTSEAVPL LGVFFSALTF IVAMSTTFTI LVLNIRYRQI TNHYLSPMFR SIFLECLPWL 360
  361 MMMKRPDHKF RRGSSYRDSS ADQCVQCAKN AELKSILRGT DNQQQIETNT FYPFPTETLS 420
  421 LNRKVGDGLF IQRRCQIHEE ARSEKFTHGM LACEKSLREN GSELANILVT ILKMYEVMVS 480
  481 QVERIRKRIA LKRKRKDIQD EWKFAAQAVD RFCLIIFTIV FIICCFIFVA IPPIKILD

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	25	0.66
Cytoplasmic	26	247	0.74
Transmembrane Helix	248	271	0.92
Non-Cytoplasmic	272	279	0.63
Transmembrane Helix	280	298	0.94
Cytoplasmic	299	309	0.57
Transmembrane Helix	310	333	0.90
Non-Cytoplasmic	334	342	0.62
Transmembrane Helix	343	362	0.69
Cytoplasmic	363	511	0.98
Transmembrane Helix	512	534	0.92
Non-Cytoplasmic	535	538	0.88