YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-5
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTPPPPLS STLIPEESST SFFASLHSLL PTFHVENGAQ LAVTMLLLIP VVYVGYRLYR  60
   61 TFFAFLKAIF IYTIAPLFYK PNLEQYQHRW TVVSGGTDGI GKAYTLELAK RGLRKFVLIG 120
  121 RNPKKLDSVK SEIEEKHSDA QIKTFVFDFG SGDFSSLRDY ISDIDVGFVV NSVGTGRDNL 180
  181 ERYGDNPDED TQILRVNGMG AAEFLSCVLP PMEKSGGGQI VVLSSSQGVR PIPMLAAYCA 240
  241 TKALMTFLCE SIDREYSTIN VQTLIPALVA TKMTYYTKGS TFVVTPENFC HQAVGSIGLT 300
  301 KKTAGCLNHE LQMLGFHLFP WTILKYLIMP IYYHQRKRVT ELHNTSNNPE QEISLQELNE 360
  361 ETVVPTTKKT VTRDSATA

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.65
Transmembrane Helix	38	56	0.70
Cytoplasmic	57	62	0.50
Transmembrane Helix	63	79	0.69
Non-Cytoplasmic	80	378	0.78