YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-4
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.75
Transmembrane Helix	15	36	0.68
Non-Cytoplasmic	37	100	0.99
Transmembrane Helix	101	125	0.86
Cytoplasmic	126	140	0.90
Transmembrane Helix	141	165	0.85
Non-Cytoplasmic	166	171	0.80
Transmembrane Helix	172	193	0.94
Cytoplasmic	194	203	0.83
Transmembrane Helix	204	224	0.90
Non-Cytoplasmic	225	229	0.75
Transmembrane Helix	230	251	0.80
Cytoplasmic	252	423	0.76
Transmembrane Helix	424	447	0.87
Non-Cytoplasmic	448	454	0.52
Transmembrane Helix	455	482	0.73
Cytoplasmic	483	493	0.46
Transmembrane Helix	494	516	0.83
Non-Cytoplasmic	517	534	0.49
Transmembrane Helix	535	556	0.94
Cytoplasmic	557	563	0.45
Transmembrane Helix	564	583	0.93
Non-Cytoplasmic	584	596	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVGSTVRSR AKARVVRRLI LLPVALVAII GAAHLMRERR SNQTGPGIIT PENTPVNASK  60
   61 PFWKTLLPTC NRSLAPPAPD VNDDGQFPPD PFSLEQRQNG FVVLHMCGLI YMFVSLAIVC 120
  121 DEFFVPSLDV LTEKLSLSDD VAGATFMAAG GSAPEFFTSV IGVFIAQNNV GIGTIVGSAT 180
  181 FNILCVLAFC TLFSKSILDL TWWPLFRDVS IYMLALAMLV FFFMDEMITF PEALAMFSIY 240
  241 IVYCTVMKFN GQLEQLVKKG SDSEEASAHE TQKLAADVPH NNNNNDLAQL EGSELRRRSS 300
  301 ARRQSVPILH SGTMFRNGIM QLMNQTLEQL PEDSEEDDSS RSRSNVNIES HDMHRLNVNQ 360
  361 SMPDRRSSQI EEIKSLLEEQ EEKPLDMTWP ETWVKRLTYV LLAPVVIPMW VTIPDVRKSH 420
  421 NRGLYPATFI ISILWIAFFS YLMVWWANTI GETFVIPTEI IGLTILAAGT SIPDLITSVI 480
  481 VARKGLGDMA VSSSVGSNIF DVCVGLPIPW LLYFLIEYIK HPNEPLSPIS VSSKGLLCSV 540
  541 GMLFIMLIVL VFAIFLSGWK MNKIFGILMI VSYVFFCVFS VSLETDKLVC PLNICG