YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.79
Transmembrane Helix	77	97	0.63
Non-Cytoplasmic	98	143	0.50
Transmembrane Helix	144	167	0.75
Cytoplasmic	168	174	0.60
Transmembrane Helix	175	197	0.87
Non-Cytoplasmic	198	229	0.65
Transmembrane Helix	230	251	0.79
Cytoplasmic	252	265	0.75
Transmembrane Helix	266	285	0.62
Non-Cytoplasmic	286	313	0.72
Transmembrane Helix	314	334	0.83
Cytoplasmic	335	350	0.70
Transmembrane Helix	351	373	0.84
Non-Cytoplasmic	374	397	0.68
Transmembrane Helix	398	424	0.80
Cytoplasmic	425	444	0.85
Transmembrane Helix	445	477	0.87
Non-Cytoplasmic	478	652	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQEEYDQMY SFNREGNETW VKKKINNYCT FLSKDGIRKI ILRRVPVIDW IGSYQINNFA  60
   61 SDFIAGLTMG VYNVPQAMSY SILAGLPPVY GLYASFFPPF LYSIFGSAKH SSIGVFSITC 120
  121 LMVDKCVKKM LKFRNENPEK FTSVQAIEIV TSLCILTGII QAVMAIFRCD KPMKFLGAPA 180
  181 ISAITFSACF FGVVSQIPKL CGFSVPSRNE HWFSLVHSIL DIFENCHKSN TATLCISASA 240
  241 LVFLIGSRIF IEPFFKNHKK LQSIPFPKEL ITIVIATSAS YFFDFEHRFG VKTLHTVPRG 300
  301 FPYPDVPRID IWPYIFQDAL SIAVVAYAVT MAMGQEFATK HRYRIDSNQE LLALGFINIG 360
  361 SSFFSVFPTS ASFSRTLVNE RSGAKTQLSG ITSACFMALV ITTIGPYLAS LPSCILSAIV 420
  421 IVVLESMLRK CTVLPGLWRC SKHDFWIWII TAVVTLSSDI AQGVAAGIFT AIFTIAIQSQ 480
  481 QPTIKLLGQI RPNDFRPMNH YSLAKETSFR IIRFDAPLIF ANVEKFLDNV RDSTSATTKK 540
  541 RSASCDSQED IEWSAIILDC HTWIYTDSMG IAAVKQINEE LRQIRILLLF ANLKSSLRRQ 600
  601 YGNAGLIGEG NIGRNQMYPS IQDALDSAHE LIKNHKMFFD CEKSMPPEKI VP