YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27947
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	40	0.92
Non-Cytoplasmic	41	60	0.89
Transmembrane Helix	61	81	0.94
Cytoplasmic	82	88	0.85
Transmembrane Helix	89	109	0.92
Non-Cytoplasmic	110	114	0.79
Transmembrane Helix	115	136	0.92
Cytoplasmic	137	146	0.82
Transmembrane Helix	147	166	0.95
Non-Cytoplasmic	167	194	0.92
Transmembrane Helix	195	217	0.91
Cytoplasmic	218	250	0.94
Transmembrane Helix	251	271	0.90
Non-Cytoplasmic	272	286	0.86
Transmembrane Helix	287	307	0.93
Cytoplasmic	308	315	0.83
Transmembrane Helix	316	337	0.91
Non-Cytoplasmic	338	344	0.85
Transmembrane Helix	345	367	0.95
Cytoplasmic	368	376	0.91
Transmembrane Helix	377	399	0.90
Non-Cytoplasmic	400	407	0.72
Transmembrane Helix	408	429	0.93
Cytoplasmic	430	457	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDDPILKR LPRGARPWAV LVGGVMCMVT FGIVYTCGNL LPYLVSYFRW KMYPDMRTGQ  60
   61 LIWLQTLLSG LPMGMVIGGL VERKFGGRAG ALLGSIIYTI GVGSTFYSIQ HSYAATLLTM 120
  121 GGIASVGSSI AYSSILPTAQ RWFPDNVGLA GGIIIGGYGC GAFILSPLQT TFINPLDYRV 180
  181 NDQGFFTQED LLERVPYVFI VMSIFFTVFQ SIGLIFIGQP EGDIHVETEN LIGTNSEIRV 240
  241 EQARVWPQLR TTTFLVLFLS LTCNAVWVQL TSGLYKAYGQ QFIDSDFFLS LIGSISSIFN 300
  301 AGSRVFWGAI ADTTSYQFSM SIVCSLGAVL AFSMPLVKMV SNDVLFLATV CLMFSCIGGT 360
  361 FSIFPYITHK CFSKANFSVM YGFLQCAVSV AGLIAGLIST HALSEIGFEY LFIVCGCFML 420
  421 TSLFLTFIVH KTDLAQLLVS AEREHLEEDE NGYQVYQ