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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gcy-12
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.84
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPTSVEALR FYHTFAFSPG RRRRLFGLSI VFVIAALCVT SCDADAVPAP SPEAEPSLGA  60
   61 GANPYLLDSL VKRLPKKGDK KEILISYLAA VPTLMGEIDQ YLLNLSASNS AQNSSKDRES 120
  121 FSKKLNQIVH CLTTDAYVSV VSGALVAAIV EINQDKDLIP AYQLKYVFGN TCGNDSHSTR 180
  181 LFMEHWQAGA RVFIGPEKNC KTEAAMAASQ NLPIISYRCN DQDISRDDYH YRTFARTVPP 240
  241 AGEIFKAFMS LMKQYNWRKF SVVYDVKKGQ VKNELFETLK RMVETENKFE EHKFEIMNVS 300
  301 KLEFSKMDIS SQQDIQSIEN AIKSTMQTTR IYLTFDNVRL FRTMLSIMGE MGLTQQDYML 360
  361 IYVDTNYDWL NVYHSMNNHF LRNTMTYLHH SWDANNSSDR KMLDYARSAL SIIPTPVKLN 420
  421 SQRFYNFWKK AGDYMHHFGV QKADNLKGNR IACYLYDAVY LYAKAIHELV EEYGNDDSYD 480
  481 PTADGKAIID RIVNKKYRSI QGFDMRIDER GNSKGNFSLL SWQKVAPIMN KSDPSYYPLD 540
  541 HALDLTAIFV EAPDKDRLPN LQFKSSRIQW LKGEPPPDEP VCGFHGENCR KKGIFSYLTV 600
  601 VVMILIAVFS LVLTGFTLNY IRSRRFEKEL SMIWKIDPYE VRRVVGGVNN ESTASLMQSD 660
  661 VMQFAKTKTP WWSKAPVQGT GMRGLASYKG TLVGLKDLMY GRKPKDLTRE AKKELRAMRQ 720
  721 LAHPNVNNFL GIIVCQYSVT VVREYCSKGS LHDILRNENL KLDHMYVASF VDDLVKGMVY 780
  781 IHDSELKMHG NLKSTNCLIT SRWTLQIADF GLRELREGIM YDSSYNIWEN FLWTAPEAMT 840
  841 INGSLAISNP PTPKADAYSF GIIFHEIFTR EGPYKIYVQR GDVNGEAAPK KDSVECRALV 900
  901 EKTVRRVYSD PYFRPDTSDL EVQNYVKEVM AACWHHDPYQ RPEFKTIKNK LKPLFHQIYK 960
  961 QNIMDHMVLM MEKYQTQLED LVDERTIELK DEQRRSQHLL QRMLPSSVAE QLLAGQDVIP1020
 1021 EAFPPVTIYF SDIVGFTTIS GESTPMEVVT FLNKLYTLFD SIIRRYDVYK VETIGDAYMV1080
 1081 VSGVPQYKTM EYHAEQIAMM AIHILSAVRS FSIPHRSCEP LMIRIGMHTG PCVAGVVGKT1140
 1141 MPRYTLFGDT VNTASRMESN GEALRIHCSS STQKVLTSID QGFLLEERGS LAIKGKGQMT1200
 1201 TYWLNGRAGY EFTETIEDKM VVPDIFPRPN LKNRGSSWAN RLTALVPACP FQRPSDHMNL1260
 1261 RFEPSNLSSS DSTSEEYLNN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle