YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27912
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYVRGVFNY RKNHKILFIV ILVILLISIV NWMVPRYYDY RQIPTKVYCD KNEIDKQKYL  60
   61 LFPMTAIVFD GGLGNQLFEV FSLLGLAMKL NRTAIFNSDD WILHSKLDLL QEQVPQVAAR 120
  121 IISIPIEIAE STRFLYSPAC CHYQFASLLS CEQNRFLIID GQYFQSFKYF STIESSIRKW 180
  181 LKPPQDEEMF LKKMIRRKDE LRYKHCVHIR RGDFTTDSQH AGTDAVFTIR AIDYLYSLHP 240
  241 GLIYLFSNDP EWVRKRIAEQ LDYHGDVKIM ETPKDAAIKD LYFSQVHCDS VLITAPSSTF 300
  301 GWWIGYMSKN QSNVYYRDIQ ETEDMVKYQM LEEDFFPRTW KKLGMSRNGL IITK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	34	0.97
Non-Cytoplasmic	35	354	0.71