YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27902
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTEPILFTK DKSLQRANKI TKKHFHFLFL SISLQAIVSV HFSIMSGIRT FLVYFELEKC  60
   61 IGELAEPRCL QLPEHLWRFW DILIAELKSE IPEIRNNFKL KYNDVDGAIL KVRGADDFEK 120
  121 FSERLENTDE NEEIVLILEN ISSKNDESSG NSQNVRIFPS ELQRGKYVGN GMHATVRMAL 180
  181 HEKTQKWYVI KTILSQNTDK TEYEKEILAY EECSQSDYVV GYHGCEVSSI KKELVLEYMD 240
  241 KGDFRPFGIL PFSVHQSVAL SLIRAIRHVW NSGPGYIHRD IKPENILVNS QGYVKICDFG 300
  301 AAKRIDNTYR IASSAAGTQM YQAPEQQMGQ DYSEKVDIWC FGLTLWEFAI GPNLEEYLNG 360
  361 LSSYEEITVE PIDGFPESLA VLISNCLRRQ PSARWNADQI EQSDYLRDLP EPNRQSVANF 420
  421 VNNYYQR

Type	Start	End	Confidence
Cytoplasmic	1	24	0.90
Transmembrane Helix	25	45	0.89
Non-Cytoplasmic	46	427	0.99