YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-114
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDESCQRIK AYQWVANIAM CFAIVSVLTV CVSMPAIYMY MFHVKQLINT EVVSCEDHAR  60
   61 EIWREVEIMK NLPFTNRTSR FPRQAAYKDA APAGGGGGGE KYSEAPPVIE AAGGGSCGGC 120
  121 CPGGPGPNGK PGKPGRPGKP GAPGLPGVPG KTTIQAPCEA ASPPPCRVCP VGMPGEQGVT 180
  181 GAPGDKGPAG QPGRNGPDGP NGEPGPKGPP GQPGADGQPG MPGEPGKDAP QEGSPVPGDP 240
  241 GPPGDSGIPG PPGPPGMAGP DGIPGMGGAK GQNGPDGPPG ASGESGPNGP PGSGGGAGEK 300
  301 GICPKYCAID GGVFFEDGTR R

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	41	0.91
Non-Cytoplasmic	42	321	0.95