YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27707
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFLFMTTS AFAVFILLLI STSIPYTFLR TCCVNASKTS ISFLGCASCG VFIATCFLGL  60
   61 VPHVRHQEMH LRGNQTIVDS YGWIPSTDQL VIIGFLIILI TEQIIHGIGH SIGNGHSHSG 120
  121 HSPLATSDSI KMNKFHDEEE GEDHVPLVAM DDDADEIIFR QNTSPHHHAP SSGHCRTAPG 180
  181 GSMNIRVWFL LLGMSVHSFF EGVALGVQND SNAFWQILIA VLFHEVLCCV SYGVQLAKHN 240
  241 ASRKYAWTSS IFLSATIPAG MILATTIDGI ENDMWQRIGR YWLEGLAAGT FVHVALVELL 300
  301 PMELHSDDSG EGGHGHSHNV IADTTHSHSN HSSSHWISLV KSLFVAAGIG IFVIIKSLIG 360
  361 EHH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.82
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	40	0.79
Transmembrane Helix	41	61	0.96
Non-Cytoplasmic	62	89	0.79
Transmembrane Helix	90	109	0.82
Cytoplasmic	110	184	0.96
Transmembrane Helix	185	205	0.91
Non-Cytoplasmic	206	212	0.81
Transmembrane Helix	213	236	0.87
Cytoplasmic	237	244	0.90
Transmembrane Helix	245	267	0.87
Non-Cytoplasmic	268	336	0.56
Transmembrane Helix	337	359	0.89
Cytoplasmic	360	363	0.50