YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hyl-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRMSYFWHE PYWLPRNVTW PEVPAKFVDL LVPIYLAIPL VIIRILWEST IGVTYLYFRT  60
   61 NAYASRKNIT LLGCMWEHMT GGFASVSRAK KILECFWRFS YYTFAFLYGL YVMKNSSWLY 120
  121 DVKQCWIGYP FHPVPDTIWW YYMIETGFYY SLLIGSTFDV RRSDFWQLMV HHVITIFLLS 180
  181 SSWTINFVRV GTLILLSHDV SDVFLEGGKL VRYDAHNKNM TNFMFVLFFS SWVATRLIYY 240
  241 PFIVIRSAVT EAAALIQPDY ILWDYQLSPP YAPRLIVFAL ILLFFLHIFW TFIILRIAYR 300
  301 TSTGGQAKDV RSDSDSDYDE EEMARRERTR LLKKKKNKVS PSTDDDDDEG EEEKNDRKAR 360
  361 HRRAPRKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.48
Transmembrane Helix	27	47	0.61
Cytoplasmic	48	94	0.68
Transmembrane Helix	95	112	0.85
Non-Cytoplasmic	113	137	0.83
Transmembrane Helix	138	158	0.84
Cytoplasmic	159	167	0.72
Transmembrane Helix	168	188	0.77
Non-Cytoplasmic	189	219	0.56
Transmembrane Helix	220	240	0.69
Cytoplasmic	241	241	0.31
Transmembrane Helix	242	256	0.34
Non-Cytoplasmic	257	271	0.63
Transmembrane Helix	272	294	0.88
Cytoplasmic	295	368	0.74