YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cln-3.3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.50
Transmembrane Helix	9	29	0.79
Cytoplasmic	30	92	0.65
Transmembrane Helix	93	112	0.87
Non-Cytoplasmic	113	119	0.51
Transmembrane Helix	120	141	0.89
Cytoplasmic	142	148	0.68
Transmembrane Helix	149	171	0.91
Non-Cytoplasmic	172	182	0.68
Transmembrane Helix	183	203	0.94
Cytoplasmic	204	247	0.78
Transmembrane Helix	248	269	0.75
Non-Cytoplasmic	270	292	0.59
Transmembrane Helix	293	311	0.49
Cytoplasmic	312	317	0.75
Transmembrane Helix	318	340	0.83
Non-Cytoplasmic	341	346	0.64
Transmembrane Helix	347	369	0.86
Cytoplasmic	370	387	0.79
Transmembrane Helix	388	409	0.60
Non-Cytoplasmic	410	417	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDRVNWPTV RIAVAFFLIG LCNNYGYVIM LSAAEDILSE QHGKVKSNAT DLCLPAITKR  60
   61 ECKPPVAEVL LSDNLPSLIV KLTFPFFMDR FPFGFRVAIV CLLQATSYFV VAFSVSIPMS 120
  121 LAGVVFVSLG GGLGEITFLG LSAHYQRIAI AGWSSGTGMA GLLGSFSYAF LTEPHMANLT 180
  181 PKVALLIQLF IPVLFAFAYF ILLKKPESVY SPTLDPKSWI VPKGYDDFIV SEHRVPQREL 240
  241 GPSDRLKLIL PMLHLMIPLA IVYVGEYMIN QGMTQQIVFD CAHGFNLSLH SQYRWYQVLY 300
  301 QFGVFVSRSS IRLVELPMWM LYLLPFLQLT NMLFFFFDAL YWFVPQIAII FALIIFEGLF 360
  361 GGSSYVNTFH KIHNKVEPDV REYCLSAASM GDSIGVNFAA GVSIPLHYWM CDQPARL