YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27565
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTVKRQKV GHGIEIDREN EQSSNPIIRV ICSVQLISMI AVTAHSTAMP FLVRIANKTH  60
   61 FLPTTSVFMM EVLKLGFCLI ITLFKSGSIK KTCHELHKTI WQNRLETMKV AVPAVVYAIQ 120
  121 NNLYYIALAN VDPTTYSVTL QIRILTTAAL SVCLLNKKLS WYQWGAQVMA LLGVVIVQLD 180
  181 KTNSHKEAVG NFWIGVSAVV GMCWTSAFAG VYFEKMLKNS SADVWIQNIR LSILTLFFAG 240
  241 ITMITTDGEA VFGGRMFEGW SNMVWLVTIL NSVGGLCISL VMKYADNVMK TYCQSIAIGL 300
  301 TSLVSICLGE RILTVYLVYG VTLVTSSVVV YSLFPVAPPA LSDYHKLEQQ DDVAELLKSS 360
  361 GVEDEEEEED EIFGELEHKI EL

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	49	0.83
Non-Cytoplasmic	50	64	0.75
Transmembrane Helix	65	84	0.86
Cytoplasmic	85	160	0.63
Transmembrane Helix	161	179	0.87
Non-Cytoplasmic	180	191	0.74
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	225	0.86
Transmembrane Helix	226	246	0.84
Non-Cytoplasmic	247	262	0.71
Transmembrane Helix	263	282	0.95
Cytoplasmic	283	290	0.76
Transmembrane Helix	291	309	0.70
Non-Cytoplasmic	310	314	0.41
Transmembrane Helix	315	337	0.77
Cytoplasmic	338	382	0.65