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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: clh-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDAVVVDEE HRRRGEDTQS SGQSSLPSDI VQFTARPHML MEDVECSPIE PTEKEWNEYR  60
   61 DRVQENADQM ELLGDDESSD TEDQNDLDEE YEDYYTDSKS TRRETTKEFL TRQFQNIVHF 120
  121 FVEDWFISAA LGFITAIFSI FIDMGIEYLI HFRNFMLESL EQFNNYAAFC GWVFYITGLV 180
  181 YLAALVCYGF GKQAVGSGIP EVKVIIHGFQ LKNYLSGKTL IAKMIGLTLT IGSGLPVGKE 240
  241 GPFVHIGAIV ASLLNKVTAA CQYNAFFSNE GRAMEMLSIG CAVGIACTFS APMGAVLYGI 300
  301 ESTSKYFAVK NYWRSFFATT CSAMLFRFAI AFFVPQHIAG TITAYYQTYF PNEVFVVEEL 360
  361 PFFIGLGVMT GLLGALFVYY HRRIAFFKRK NRIFQALFGK SPILFTACCA AIFAVLVYPN 420
  421 GLGSYVAGKY TFRETLVDFL SNCTLWKQTN GSEGCPPHML EHWSGPEGDM MPINSLLIYF 480
  481 LFYFIIVPIC ITLYIPSGIF VPCFVIGACG GRIFGEIISM IWPYGLRGLG QPQIYPGLYA 540
  541 VVGAASFTGS VTHSLSIALI VCETTGQLCA LLPVLIALMI SNAICAFLQP SIYDSIIKIN 600
  601 GYPYLADLPP SRMSVHQMKV ERIMVKDIFY ITRETTYREL REMLLESPTL RSYPFVTDSR 660
  661 SMTLLGSVAR KYLLYLIQRK LGPEPELFGH RRRSRTASEI FSTINNLRKY SRRGSLAANG 720
  721 AHMSSGNALM TDRNISGNTL LPQSPLHEDQ GDRSPLAPLL YAQTNQHEPI VHSLAKRAEI 780
  781 LSKKLDMEEV AIDPAPFQLV RGTSLYKVHT LFSLLALNHA YVTEKGRLCG VVAVKELREA 840
  841 LSNIYSRGAV VPKQRIRTST FRLNPEQDLD RELQNGHTAE PNGAPIRQPR VTIDVPENAK 900
  901 TDDETR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle