YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: odr-1
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.07
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVLRLWQMR RPMDSVQQSQ YSEKHLELLT VIILLKLFGV FHRINQQHGC SGDNSVKSAS  60
   61 YAINAVASRT SGELDFVFVG PTCTTDIRTI GDFAEIWKSP VIGYEPVFEA RGVQELTSVI 120
  121 NVAQFSVGGV AETLVFLMKE LEQVEITLVG SVKVLPNGLS LSNDLRSYNE IMNSFKIREY 180
  181 VEVDENDVDW TKVDQKIKRG ARMIVVCADF YDIYSAFYNI GIRSLSGFRF IIVVILNKPP 240
  241 DEILNQPNVK NLLYGSNAFI ISPLQEQYSD AFSIMQDVIP NLADDQFTTF LRIYHACYAY 300
  301 CVGSVNGAET QTDNYHTAMS GKAVTTKYGT FTFDNSGSVL TNYAVFTINP AEMTFESILT 360
  361 LKSVAKSCDT YNCFQLSPNK TSDLLWTLKD MDPPDDCVAK SSCVNYIPHI IAAVVIVTII 420
  421 VIAIVIIVKQ RRHKLNIYKL TWKVPKESLK IIVNKNADAK MQRELENRAS NTDNAAALTS 480
  481 RRRVFGSYAL VGTQRAEYVQ FKQIRKINFP ETTLDYLYSL KQLQHDNLAK FYGIQVNDDI 540
  541 MTMTILHTLV ERGTLEEFCL DRDFGMDDTF KSAFMRDILK GLQYLHKSSI GYHGHLQAST 600
  601 CLIDINWVLK LTLYGVSNFM SDQLDAENIK VPEQAAHMIT YPQYVCFPPE HIREYDDSGK 660
  661 QPPRVVRGSP KGDIYCVGMI FYMMVEREDP YHLIHSVERP NATLIKQILN ENHMPRITDD 720
  721 YRQENMLLEM CKECWDRNPD KRPTIKKLIE SISTVYPLSK GNLVDQMIRM SEKYADELEQ 780
  781 MVAIRTADLA DAQMQTMRLL NEMLPASIAK DLKNGLIMPP RSYESATVMF VQICDFNALM 840
  841 KRSSPEQVIA FLNDIYDQFD TVIKRHDAYK VETTGETYMV ASGVPHENEG RHIFEVAEIS 900
  901 LEIREISYIY VLQHDKNYKL RIRIGFHAGP IAAGVIGIRS PRYCLFGDTV NFASRMQSNC 960
  961 PPNQIQTSEI TARLLFDSHE YKFVKRGIVH VKGKGNAARL KICCETFETH SIDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle