YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVPFLTSL TSHLGITAID DASDTLSCLI TAFLFITAAI LTSAKTYVGS AMECWLPQTY  60
   61 SGDWGEFAEN YCFLKDTYFY PRQQSMTDIP MYHKERHRLT YYQWSSMYLA VAGIAFMIPK 120
  121 FLWRLSQSTT DMPVVYFCDT ANEIKNETED KRSAKIKEMA RFMRTKITSV HTPSLFSFIR 180
  181 MYMVYSVIKI LYLVNAIAQF VIIAIFLGQK RNLFWGWTLF MNLLNGITWE TTGLFPRVTF 240
  241 CDFQVREMAG NNRDETVECV IGINEFNEKI FLFFWFWLVF LVFSTLIAHF YNAAQIVKPY 300
  301 FIHSLLFAIR DHDIVDQKEL FREFGEKYLT MDGKLILSFV KSQSDLVASE VAVEMYSDFL 360
  361 EARDRANIAE DKYNNILKNG KQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.46
Transmembrane Helix	21	42	0.64
Cytoplasmic	43	100	0.65
Transmembrane Helix	101	123	0.86
Non-Cytoplasmic	124	184	0.65
Transmembrane Helix	185	207	0.87
Cytoplasmic	208	212	0.73
Transmembrane Helix	213	233	0.69
Non-Cytoplasmic	234	270	0.78
Transmembrane Helix	271	293	0.90
Cytoplasmic	294	382	0.80