YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27185
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.96
Transmembrane Helix	45	64	0.89
Non-Cytoplasmic	65	97	0.91
Transmembrane Helix	98	120	0.91
Cytoplasmic	121	129	0.86
Transmembrane Helix	130	150	0.93
Non-Cytoplasmic	151	156	0.79
Transmembrane Helix	157	179	0.91
Cytoplasmic	180	190	0.88
Transmembrane Helix	191	214	0.85
Non-Cytoplasmic	215	221	0.81
Transmembrane Helix	222	242	0.94
Cytoplasmic	243	299	0.98
Transmembrane Helix	300	320	0.88
Non-Cytoplasmic	321	341	0.82
Transmembrane Helix	342	363	0.95
Cytoplasmic	364	372	0.90
Transmembrane Helix	373	394	0.95
Non-Cytoplasmic	395	406	0.84
Transmembrane Helix	407	430	0.91
Cytoplasmic	431	441	0.90
Transmembrane Helix	442	464	0.88
Non-Cytoplasmic	465	470	0.82
Transmembrane Helix	471	491	0.92
Cytoplasmic	492	510	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKSRSDTS ATASLSDSSK SPSSYSTPGT TTQKIIFPDG KLTKCLAFSA FVITLASFQF  60
   61 GYHIGCVNAP GGLITEWIIG SHKDLFDKEL SRENADLAWS VAVSVFAVGG MIGGLSSGWL 120
  121 ADKVGRRGAL FYNNLLALAA AALMGLAKSV GAYPMVILGR LIIGLNCGFS SALVPMFLTE 180
  181 ISPNNLRGML GSLHQLLVTI AILVSQIFGL PHLLGTGDRW PLIFAFTVVP AVLQLALLML 240
  241 CPESPKYTMA VRGQRNEAES ALKKLRDTED VSTEIEAMQE EATAAGVQEK PKMGDMFKGA 300
  301 LLWPMSIAIM MMLAQQLSGI NVAMFYSTVI FRGAGLTGNE PFYATIGMGA VNVIMTLISV 360
  361 WLVDHPKFGR RSLLLAGLTG MFVSTLLLVG ALTIQNSGGD KWASYSAIGF VLLFVISFAT 420
  421 GPGAIPWFFV SEIFDSSARG NANSIAVMVN WAANLLVGLT FLPINNLMQQ YSFFIFSGFL 480
  481 AFFIFYTWKF VPETKGKSIE QIQAEFEKRK