YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27184
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	46	0.90
Non-Cytoplasmic	47	79	0.91
Transmembrane Helix	80	102	0.91
Cytoplasmic	103	111	0.86
Transmembrane Helix	112	132	0.93
Non-Cytoplasmic	133	138	0.79
Transmembrane Helix	139	161	0.91
Cytoplasmic	162	172	0.88
Transmembrane Helix	173	196	0.85
Non-Cytoplasmic	197	203	0.81
Transmembrane Helix	204	224	0.94
Cytoplasmic	225	281	0.98
Transmembrane Helix	282	302	0.88
Non-Cytoplasmic	303	323	0.82
Transmembrane Helix	324	345	0.95
Cytoplasmic	346	354	0.90
Transmembrane Helix	355	376	0.95
Non-Cytoplasmic	377	388	0.84
Transmembrane Helix	389	412	0.91
Cytoplasmic	413	423	0.90
Transmembrane Helix	424	446	0.88
Non-Cytoplasmic	447	452	0.82
Transmembrane Helix	453	473	0.92
Cytoplasmic	474	492	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVNDHDVSV PLQEVQSRTV EGKLTKCLAF SAFVITLASF QFGYHIGCVN APGGLITEWI  60
   61 IGSHKDLFDK ELSRENADLA WSVAVSVFAV GGMIGGLSSG WLADKVGRRG ALFYNNLLAL 120
  121 AAAALMGLAK SVGAYPMVIL GRLIIGLNCG FSSALVPMFL TEISPNNLRG MLGSLHQLLV 180
  181 TIAILVSQIF GLPHLLGTGD RWPLIFAFTV VPAVLQLALL MLCPESPKYT MAVRGQRNEA 240
  241 ESALKKLRDT EDVSTEIEAM QEEATAAGVQ EKPKMGDMFK GALLWPMSIA IMMMLAQQLS 300
  301 GINVAMFYST VIFRGAGLTG NEPFYATIGM GAVNVIMTLI SVWLVDHPKF GRRSLLLAGL 360
  361 TGMFVSTLLL VGALTIQNSG GDKWASYSAI GFVLLFVISF ATGPGAIPWF FVSEIFDSSA 420
  421 RGNANSIAVM VNWAANLLVG LTFLPINNLM QQYSFFIFSG FLAFFIFYTW KFVPETKGKS 480
  481 IEQIQAEFEK RK