YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: abts-1
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHSVRRRMS KARRESQSIE LSSLAPGTRV MFLLKEKENT PALFTEMGEL NNEEWRETAR  60
   61 WVKFEEDVEQ GGNRWSKPHV ATLSLHSLFQ LRSCIMNGHF MNDLAETDIP SIFNAVIENL 120
  121 EKSGDLPSEN REELREILLR KHVHQYEQAK KNGAGGEKGG FLSTVRSISD IGKSFSHGKN 180
  181 LSKIEEKPEG PVTSQTAGAP SGSSNQLTLP TVESVPKDIS SEESSKGNLH FLKKLPAGVE 240
  241 ASNVLIGEVD FLTRHICCFI RLKNANQLGD LTEVPVPTRF IFLLLGPTGH GQQYREIGRA 300
  301 IATLMADEIF HDVAYGARDV DDLLDGIDEF LDQVTVLPPG EWDPNIRIEP PSKLPSQEKR 360
  361 KQIGQELLVE PSSHKHVKKV VEEEEIHSHG DDPALKRTGK LFGGLILDIK RKAPHFVSDF 420
  421 TDAFNLQCLA SICFMYFGLL APIVTFGGLL EEATHQRMAA MENLFGGALC GVIYHFFAGQ 480
  481 PLTIVGSTGP VLVFETIVFD FCHRFGIVYL SFRFWVHVWT AVIIFLMVVT DASALVSFIT 540
  541 RFTEESFATL IAVIFIYEAI MKLVKIKGQL DMINYSRDFV EGGFCSCVPP IGKPSVSPDH 600
  601 ARLVIKSTGL PIAFNDTFID YTAANLTDCR TIGGSFDGTT CFPLYDKLLM SILLTVGTFF 660
  661 LATTLKKMRN SCYFPSSVRQ LLSDFAVMIA IASMTFVDIF VGVNTPKLNV PSTFRPTWEG 720
  721 RGWFIPPFDA NEWWTAPLAI LPALLACILI FMDQQITTVI VNRKENKLKK GCGYHLDLLV 780
  781 LSVSILMVGF LGLPIYVAAT VLSINHINSL KVESECKAPG EVAQFVGVRE QRVTGIVTFL 840
  841 IIGLSVLATN ILGRIPMPVL YGVFLYMGIS ALGGIQLFDR TLLLFMPMKY QPDTIYIRHV 900
  901 PIRKIHLFTA FQIGCLALLW VIKSIKSTSI LFPIMLVVMV AIRKMMEKAF TTTDLKYLDD 960
  961 PMPDFHLRKK EDAKRRQSEG EAVEIEFDNE NQATIHAVKT EAHLHIPMAS GNVIKIPLAA1020
 1021 IQEPSHSINL TKEVNNSGMW KHITSVDSKN SLVRDVPASS DPTSSRDAPI EQPEDDDDPI1080
 1081 MIKVIRPSPH TSTSNLTTEN TPLLKDEEPP KTNPDEPKV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle