YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27130
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.89
Transmembrane Helix	42	63	0.60
Non-Cytoplasmic	64	125	0.65
Transmembrane Helix	126	145	0.74
Cytoplasmic	146	151	0.76
Transmembrane Helix	152	172	0.91
Non-Cytoplasmic	173	178	0.68
Transmembrane Helix	179	200	0.79
Cytoplasmic	201	208	0.93
Transmembrane Helix	209	231	0.91
Non-Cytoplasmic	232	236	0.89
Transmembrane Helix	237	256	0.95
Cytoplasmic	257	328	0.98
Transmembrane Helix	329	350	0.89
Non-Cytoplasmic	351	357	0.64
Transmembrane Helix	358	376	0.88
Cytoplasmic	377	392	0.80
Transmembrane Helix	393	415	0.91
Non-Cytoplasmic	416	422	0.83
Transmembrane Helix	423	445	0.91
Cytoplasmic	446	459	0.81
Transmembrane Helix	460	480	0.84
Non-Cytoplasmic	481	489	0.76
Transmembrane Helix	490	510	0.93
Cytoplasmic	511	540	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSQKTEKC DNEESLQILE KTNTGTMYNT VHSDDLLKMG RYSILLCIFV EVAMLSQLSN  60
   61 TMLMVYAGAA PTIKSCGNMT FSSNEEACLH YSYCKEQKEM TFERQFYGIT EQFKLLCEDA 120
  121 KLEKLGTSIQ MLGVMLGCVV FGQIGDQYGR KTPMMFCLCM CFIFGIMSAL SADFKKFTIF 180
  181 RTILCFFNGG QSTISVVYMI ENIPKRTRGY ISTLISYSPN VILLGILAFF FQQWDRLALV 240
  241 ISFLTVPAII MLAFLHESPR WLMQKGQISH AKKVFLAIEK FDGVPAAKSL NETELENFLE 300
  301 NEHDKQVADG NTEVGKQHSF WHLFKTKEIM TGTFVIAFTF FATTLINYSI MFNLGAVAGS 360
  361 IYMNSILIGL LRYSFSLFSG LLDYKFEKFD RKMCHGICSV VTISIIVAII AFCLTDTTAT 420
  421 FSVLIRIGVL LSCAMTSQAI IVASIASNEL MPTAIRSISY STAQLCSRFG IVFAPHVFHL 480
  481 NLYTGIDFPV LPYAILLAIG LADFIFFRFL IPETKNKPLE DFIVNRTKTI GNDEEEEDRV 540
  541