YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyp-23A1
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLRNAILL TIATTFLYFR IMRTLNFDNY MATYIYFLTC ITLYAIYELN YKRRRLPNGP  60
   61 VPWLVAGNMP SFINVNNVDV LFQSWKQQYG GIFTVWIGPI PLVMVSDLPT IKKYFIQHAD 120
  121 SFSNRWRNFV TDSIMEGSNG IVQIDGNKWR EQRRFALHTL RDFGVGKPLM EQMITLEVTS 180
  181 LMNHMEKSCG LDGKELHLCP SIAVCVGNII NNMLFGLRFN QDNSYMHRLH QLLDDQSHTV 240
  241 MQPIMGAYIA FPVTSKIPII NGEWNRLMGI KNELLEFLET QIEGHRMNWK DEMIEQEPED 300
  301 LTYAYMIEVE KRKRNGEDVG FFDDQQLKML LLDLFFAGME TTVTTLKWAF LLMAKNQKVQ 360
  361 KNVQAELDSI GQPMIEIQHR TRLPYVQATI NEIQRIANIL PINLLRTVAE DIEIDGYNFK 420
  421 KGDLIIPQIS ILMNDPEIFE NPEEFNPSRF LDEDNNVKKI DEFLPFSIGR RQCLGESLAR 480
  481 AELYLVFANL IQNFNFEVAD DVTTERVLGL TVSPVEYSCK ITRRGLDHNQ NSVK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	22	0.76
Non-Cytoplasmic	23	29	0.65
Transmembrane Helix	30	51	0.78
Cytoplasmic	52	88	0.46
Transmembrane Helix	89	108	0.47
Non-Cytoplasmic	109	534	0.65